standard matrix exponential calculator expm Search Results


99
Thermo Fisher gene exp mmp9 hs00234579 m1
The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 <t>(MMP-9)</t> (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.
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The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 <t>(MMP-9)</t> (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.
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Thermo Fisher gene exp mmp2 hs00234422 m1
The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 <t>(MMP-2)</t> (C) and matrix metalloproteinase-9 (MMP-9) (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.
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Thermo Fisher gene exp mmp2 hs01548727 m1
Inhibition of <t>MMP-2</t> and MMP-9 reduced Rb migration. a - b Y79 and Weri-1 cells were added to the upper chamber of an 8 μm polycarbonate membrane coated with basement membrane proteins in serum free media. The lower chamber contained cell culture media with or without MMPI. Six-hours post culture, invasive cells degraded the ECM and were collected, stained and counted. Representative figures are shown in a with a 100× total magnification. Cells were extracted and OD measured in b left for Y79 and right for Weri-1. c Y79 Rb cells were cultured in the presence or absence of MMP-2 or MMP-9 inhibitors for 48-h on poly-L-lysine coated wells with gelatin as substrate. Sterile in-well inserts created a gap of 900 μm. Gap closure was recorded at different time intervals using an Axiovert 40 CFL. Total magnification is 12.5×. Plotted results are in c right . d Weri-1 cells showed increased cell death and detachment from coated surface. For each condition n = 3; gap was measured in 5 different points
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Thermo Fisher gene exp mmp14 hs01037003 g1
Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and <t>MMP14</t> . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005
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MathWorks Inc standard matrix exponential calculator expm
Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and <t>MMP14</t> . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005
Standard Matrix Exponential Calculator Expm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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91
Thermo Fisher gene exp clpp rn01527475 m1
Mitochondrial UPR. Logarithmic fold-change in mRNA expression of long-term treated Fao of ( a ) Hspd1/Hsp60 ( n = 4), ( c ) Txn2 ( n = 4), ( d ) <t>Clpp</t> ( n = 3), and ( e ) Ymel1l ( n = 3); protein amounts long-term treated Fao standardized to total protein acquired from Coomassie-stained gel of ( b ) HSP60 with the corresponding blot ( n = 4). Data are presented as the mean ± standard deviation (SD) and analyzed with one-way ANOVA followed by Dunnett’s test, comparing all samples to the baseline control with no added H 2 O 2 (*); samples with 1.5 mM H 2 O 2 added are also compared to their untreated control at 1.5 mM H 2 O 2 ( # ). * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001; n : number of biological replicates.
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Thermo Fisher gene exp mmp9 mm00600157 g1
Cmklr1 knockout is associated with increased dNK cells. (A) The amount and distribution of dNK cells of wildtype and Cmklr1 −/− were investigated by immunohistochemically staining with antibodies against DBA Lectin in different magnifications. Scale bar = 200 μm. Quantification of the number of dNK cells. (B) The concentration of IL-15 in serum of wildtype and Cmklr1 −/− at GD 12 was measured by ELISA. Total RNA samples from wildtype and Cmklr1 −/− placentas at GD12 were subjected to qRT-PCR. The middle placenta section from each litter (four litters from four mothers per group) was used for analysis. The expression of (C) IL-8, (D) MMP2, (E) <t>MMP9,</t> (F) IL-10, (G) TNF-α and (H) IL-6 were examined. The results were represented as mean ± SD, n = 4. * p < 0.05 and ** p < 0.01. IL: Interleukin; TNF-α: Tumor necrosis factor-alpha; MMP: Matrix Metallopeptidase; TIMP: Tissue inhibitor of metalloproteinases. qRT-PCR: quantitative reverse-transcription polymerase chain reaction; SD: standard deviation. TPBPA: trophoblast-specific protein alpha.
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MathWorks Inc matrix exponential method expm
Cmklr1 knockout is associated with increased dNK cells. (A) The amount and distribution of dNK cells of wildtype and Cmklr1 −/− were investigated by immunohistochemically staining with antibodies against DBA Lectin in different magnifications. Scale bar = 200 μm. Quantification of the number of dNK cells. (B) The concentration of IL-15 in serum of wildtype and Cmklr1 −/− at GD 12 was measured by ELISA. Total RNA samples from wildtype and Cmklr1 −/− placentas at GD12 were subjected to qRT-PCR. The middle placenta section from each litter (four litters from four mothers per group) was used for analysis. The expression of (C) IL-8, (D) MMP2, (E) <t>MMP9,</t> (F) IL-10, (G) TNF-α and (H) IL-6 were examined. The results were represented as mean ± SD, n = 4. * p < 0.05 and ** p < 0.01. IL: Interleukin; TNF-α: Tumor necrosis factor-alpha; MMP: Matrix Metallopeptidase; TIMP: Tissue inhibitor of metalloproteinases. qRT-PCR: quantitative reverse-transcription polymerase chain reaction; SD: standard deviation. TPBPA: trophoblast-specific protein alpha.
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Thermo Fisher gene exp comp hs00164359 m1
Detailed information of primers used in the present study.
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Thermo Fisher gene exp efemp1 rn01434325 m1
(A) Manhattan plot of GWAS results in the isolated BA cohort. X-axis: genomic coordinates of tested SNPs. Y-axis: significance level on a -log 10 scale. The genome-level significance threshold is indicated by the red horizontal line ( P = 5 × 10 −8 ) and the suggestive significance threshold is indicated by the blue horizontal line ( P = 1 × 10 −5 ). (B) Regional association plot of 2p16.1 after meta-analysis. P -values (left Y-axis) obtained from additive frequentist association test on genotyped and imputed SNPs. The recombination rate (right Y-axis) is calculated from the 1000 Genomes Phase 3 European ancestry dataset. The top BA-associated SNP is imputed SNP rs6761893 (purple circle), located in the fifth intron of the gene <t>EFEMP1</t> . The colors refer to r-square correlation of each SNP to rs6761893 based on the 1000 Genomes Phase 3 European ancestry dataset. The circles represent the genotyped markers and squares represent imputed markers.
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Thermo Fisher gene exp comp ss03375728 u1
Detailed information of primers used in the present study.
Gene Exp Comp Ss03375728 U1, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 (MMP-9) (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.

Journal: International Journal of Molecular Sciences

Article Title: Selective Cytotoxicity of Complexes with N,N,N-Donor Dipodal Ligand in Tumor Cells

doi: 10.3390/ijms22041802

Figure Lengend Snippet: The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 (MMP-9) (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.

Article Snippet: The following Taq-Man human probes (Applied Biosystems) were used for qPCR reaction: VEGFA (Hs00173626_m1), VIM (001855284_m1), MMP-2 (Hs00234422_m1), MMP-9 (Hs00234579_m1) and GAPDH (Hs99999905_m1).

Techniques: Expressing, Real-time Polymerase Chain Reaction, Control, Standard Deviation

The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 (MMP-9) (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.

Journal: International Journal of Molecular Sciences

Article Title: Selective Cytotoxicity of Complexes with N,N,N-Donor Dipodal Ligand in Tumor Cells

doi: 10.3390/ijms22041802

Figure Lengend Snippet: The effect of complexes 1, 2 and 3 and their salts on the expression of genes controlling angiogenesis and invasive/metastatic phenotype of tumour cells. The expression of mRNA for vascular endothelial growth factor a (VEGFa) (A), vimentin (Vim) (B), matrix metalloproteinase-2 (MMP-2) (C) and matrix metalloproteinase-9 (MMP-9) (D) in Hep G2 cells was analysed with Real-Time PCR (qPCR). The cells (2 × 10 4 /well) were exposed to 50 μM/L of each compound (or appropriate comparator salt) for 24 h. The data were normalized against reference gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) transcript; the 2 −ΔΔCt method was used for determination of mRNA level; * p < 0.05 and ** p < 0.01 vs. untreated control). The real-time PCR data were presented as arithmetic mean values and standard deviation (M; ±SD), n = 3.

Article Snippet: The following Taq-Man human probes (Applied Biosystems) were used for qPCR reaction: VEGFA (Hs00173626_m1), VIM (001855284_m1), MMP-2 (Hs00234422_m1), MMP-9 (Hs00234579_m1) and GAPDH (Hs99999905_m1).

Techniques: Expressing, Real-time Polymerase Chain Reaction, Control, Standard Deviation

Inhibition of MMP-2 and MMP-9 reduced Rb migration. a - b Y79 and Weri-1 cells were added to the upper chamber of an 8 μm polycarbonate membrane coated with basement membrane proteins in serum free media. The lower chamber contained cell culture media with or without MMPI. Six-hours post culture, invasive cells degraded the ECM and were collected, stained and counted. Representative figures are shown in a with a 100× total magnification. Cells were extracted and OD measured in b left for Y79 and right for Weri-1. c Y79 Rb cells were cultured in the presence or absence of MMP-2 or MMP-9 inhibitors for 48-h on poly-L-lysine coated wells with gelatin as substrate. Sterile in-well inserts created a gap of 900 μm. Gap closure was recorded at different time intervals using an Axiovert 40 CFL. Total magnification is 12.5×. Plotted results are in c right . d Weri-1 cells showed increased cell death and detachment from coated surface. For each condition n = 3; gap was measured in 5 different points

Journal: BMC Cancer

Article Title: Inhibition of MMP-2 and MMP-9 decreases cellular migration, and angiogenesis in in vitro models of retinoblastoma

doi: 10.1186/s12885-017-3418-y

Figure Lengend Snippet: Inhibition of MMP-2 and MMP-9 reduced Rb migration. a - b Y79 and Weri-1 cells were added to the upper chamber of an 8 μm polycarbonate membrane coated with basement membrane proteins in serum free media. The lower chamber contained cell culture media with or without MMPI. Six-hours post culture, invasive cells degraded the ECM and were collected, stained and counted. Representative figures are shown in a with a 100× total magnification. Cells were extracted and OD measured in b left for Y79 and right for Weri-1. c Y79 Rb cells were cultured in the presence or absence of MMP-2 or MMP-9 inhibitors for 48-h on poly-L-lysine coated wells with gelatin as substrate. Sterile in-well inserts created a gap of 900 μm. Gap closure was recorded at different time intervals using an Axiovert 40 CFL. Total magnification is 12.5×. Plotted results are in c right . d Weri-1 cells showed increased cell death and detachment from coated surface. For each condition n = 3; gap was measured in 5 different points

Article Snippet: We used the following Human TaqMan® Gene Expression Assays: HPRT1 (Hs02800695_m1), MMP2 (Hs01548727_m1), MMP7 (Hs01042796_m1), MMP9 (Hs00234579_m1), MMP14 (Hs01037003_g1) all from Life Technologies (Grand Island, NY).

Techniques: Inhibition, Migration, Membrane, Cell Culture, Staining, Sterility

Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and MMP14 . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005

Journal: BMC Cancer

Article Title: Inhibition of MMP-2 and MMP-9 decreases cellular migration, and angiogenesis in in vitro models of retinoblastoma

doi: 10.1186/s12885-017-3418-y

Figure Lengend Snippet: Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and MMP14 . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005

Article Snippet: We used the following Human TaqMan® Gene Expression Assays: HPRT1 (Hs02800695_m1), MMP2 (Hs01548727_m1), MMP7 (Hs01042796_m1), MMP9 (Hs00234579_m1), MMP14 (Hs01037003_g1) all from Life Technologies (Grand Island, NY).

Techniques: Isolation, cDNA Synthesis, Amplification, Expressing, Control, Standard Deviation, Knockdown, Western Blot, Enzyme-linked Immunosorbent Assay

Working model of the roles of MMP-2 and MMP-9 in retinoblastoma cells. Y79 and Weri-1 cells represent the metastatic and the non-metastatic model for Rb, respectively. Our work shows differences in viability, migration and angiogenic-associated responses in Rb cells after inhibition of MMP-2 and MMP-9. a Y79 cells showed a profound defect in migration and invasion along with and a significant reduction in Angiopoietin-2 and TGF-β1 proteins. These results highlight Y79’s migratory and invasive potential, which may be dependent upon MMPs. b Analyses of Weri-1 cells show MMP-2 and MMP-9 are involved in multiple processes, including viability of cells and VEGF, as well as TGF-β1 production

Journal: BMC Cancer

Article Title: Inhibition of MMP-2 and MMP-9 decreases cellular migration, and angiogenesis in in vitro models of retinoblastoma

doi: 10.1186/s12885-017-3418-y

Figure Lengend Snippet: Working model of the roles of MMP-2 and MMP-9 in retinoblastoma cells. Y79 and Weri-1 cells represent the metastatic and the non-metastatic model for Rb, respectively. Our work shows differences in viability, migration and angiogenic-associated responses in Rb cells after inhibition of MMP-2 and MMP-9. a Y79 cells showed a profound defect in migration and invasion along with and a significant reduction in Angiopoietin-2 and TGF-β1 proteins. These results highlight Y79’s migratory and invasive potential, which may be dependent upon MMPs. b Analyses of Weri-1 cells show MMP-2 and MMP-9 are involved in multiple processes, including viability of cells and VEGF, as well as TGF-β1 production

Article Snippet: We used the following Human TaqMan® Gene Expression Assays: HPRT1 (Hs02800695_m1), MMP2 (Hs01548727_m1), MMP7 (Hs01042796_m1), MMP9 (Hs00234579_m1), MMP14 (Hs01037003_g1) all from Life Technologies (Grand Island, NY).

Techniques: Migration, Inhibition

Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and MMP14 . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005

Journal: BMC Cancer

Article Title: Inhibition of MMP-2 and MMP-9 decreases cellular migration, and angiogenesis in in vitro models of retinoblastoma

doi: 10.1186/s12885-017-3418-y

Figure Lengend Snippet: Pharmacological inhibitors of MMP-2 and MMP-9 downregulate MMP2 and MMP9 mRNA. a The following MMPs were examined at the transcriptional level: MMP2 , MMP7 , MMP9 , and MMP14 . Y79 ( left ) and Weri-1 ( right ) cells were harvested for RNA isolation and cDNA synthesis. Material was pre-amplified using the TaqMan® PreAmp Master Mix with the respective primers. qPCR was done and results show mRNA expression relative to HPRT1 as endogenous control. Bar graphs indicate results ±SD; n = 3 biological replicates in triplicates. Y79 Rb cells express MMP2 , MMP9 and MMP14 ; Weri-1 expressed MMP2 and MMP9 . b - c Y79 ( b ) and Weri-1 ( c ) cells were treated with MMP-2 and MMP-9 inhibitors overnight. RNA and cDNA was extracted as in a showing that the inhibitors act at the transcriptional level. Bar graphs indicate fold change ±SD; n = 3. Standard deviation obtained from the biological replicates. d Knockdown of MMP2 and MMP9 by RNA interference shows on-target effects. Downregulation of MMP2 and MMP9 after siRNA compared to scramble samples. qPCR done as in a . e - f Reduction of MMP-2 and MMP-9 protein in Rb cells treated with MMPI ( e ) and siRNA ( f ); * p < 0.05, ** p < 0.005. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3. g - h ELISA analyses of MMP-2 and MMP-9 protein of whole cell lysates after treatment with MMPI ( g ) or siRNA ( h ); * p < 0.05, ** p < 0.005. i - j , E2F regulates MMP expression in Y79 cells. Y79 cells treated with MMPI ( i ) or with siRNA ( j ) were assessed by Wb analysis for E2F. Western blot bar graphs indicate results ±SEM ratio of target protein to β-actin; n = 3; ** p < 0.005

Article Snippet: We used the following Human TaqMan® Gene Expression Assays: HPRT1 (Hs02800695_m1), MMP2 (Hs01548727_m1), MMP7 (Hs01042796_m1), MMP9 (Hs00234579_m1), MMP14 (Hs01037003_g1) all from Life Technologies (Grand Island, NY).

Techniques: Isolation, cDNA Synthesis, Amplification, Expressing, Control, Standard Deviation, Knockdown, Western Blot, Enzyme-linked Immunosorbent Assay

Mitochondrial UPR. Logarithmic fold-change in mRNA expression of long-term treated Fao of ( a ) Hspd1/Hsp60 ( n = 4), ( c ) Txn2 ( n = 4), ( d ) Clpp ( n = 3), and ( e ) Ymel1l ( n = 3); protein amounts long-term treated Fao standardized to total protein acquired from Coomassie-stained gel of ( b ) HSP60 with the corresponding blot ( n = 4). Data are presented as the mean ± standard deviation (SD) and analyzed with one-way ANOVA followed by Dunnett’s test, comparing all samples to the baseline control with no added H 2 O 2 (*); samples with 1.5 mM H 2 O 2 added are also compared to their untreated control at 1.5 mM H 2 O 2 ( # ). * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001; n : number of biological replicates.

Journal: International Journal of Molecular Sciences

Article Title: Antipsychotic Drug Aripiprazole Protects Liver Cells from Oxidative Stress

doi: 10.3390/ijms23158292

Figure Lengend Snippet: Mitochondrial UPR. Logarithmic fold-change in mRNA expression of long-term treated Fao of ( a ) Hspd1/Hsp60 ( n = 4), ( c ) Txn2 ( n = 4), ( d ) Clpp ( n = 3), and ( e ) Ymel1l ( n = 3); protein amounts long-term treated Fao standardized to total protein acquired from Coomassie-stained gel of ( b ) HSP60 with the corresponding blot ( n = 4). Data are presented as the mean ± standard deviation (SD) and analyzed with one-way ANOVA followed by Dunnett’s test, comparing all samples to the baseline control with no added H 2 O 2 (*); samples with 1.5 mM H 2 O 2 added are also compared to their untreated control at 1.5 mM H 2 O 2 ( # ). * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001; n : number of biological replicates.

Article Snippet: The following TaqMan probes labeled with the FAM dye (Thermo Fisher Scientific) were used: the reference gene Rn18s (Rn03928990_g1), Nrf2/Nfe2l2 (Rn00582415_m1), Srxn1 (Rn04337926_g1), Sirt1 (Rn01428096_m1), Foxo3α (Rn01441087_m1), Bip/Hspa5 (Rn00565250_m1), Chop/Ddit3 (Rn00492098_g1), p53 (Rn00755717_m1), p21 (Rn00589996_m1), Gadd45α (Rn00577049_m1), Gadd45 β (Rn01452530_g1), Gadd45 γ (Rn01352550_g1), Icam1 (Rn00564227_m1), Hspd1 (Rn01441529_g1), Txn2 (Rn00584162_g1), Clpp (Rn01527475_m1), Ymel1l (Rn00586650_m1).

Techniques: Expressing, Staining, Standard Deviation, Control

Summary statistical results with probability values (P). Gray box: no statistical significance ( p > 0.05); green box : gene upregulation, more protein or higher enzyme activity; red box : gene downregulation, less protein, decreased cell viability or enzyme activities; white box: results are not presented/acquired due to reduced cell viability. Prot.: protein, exp.: expression, erUPR: endoplasmic reticulum unfolded protein response, mtUPR: mitochondrial unfolded protein response.

Journal: International Journal of Molecular Sciences

Article Title: Antipsychotic Drug Aripiprazole Protects Liver Cells from Oxidative Stress

doi: 10.3390/ijms23158292

Figure Lengend Snippet: Summary statistical results with probability values (P). Gray box: no statistical significance ( p > 0.05); green box : gene upregulation, more protein or higher enzyme activity; red box : gene downregulation, less protein, decreased cell viability or enzyme activities; white box: results are not presented/acquired due to reduced cell viability. Prot.: protein, exp.: expression, erUPR: endoplasmic reticulum unfolded protein response, mtUPR: mitochondrial unfolded protein response.

Article Snippet: The following TaqMan probes labeled with the FAM dye (Thermo Fisher Scientific) were used: the reference gene Rn18s (Rn03928990_g1), Nrf2/Nfe2l2 (Rn00582415_m1), Srxn1 (Rn04337926_g1), Sirt1 (Rn01428096_m1), Foxo3α (Rn01441087_m1), Bip/Hspa5 (Rn00565250_m1), Chop/Ddit3 (Rn00492098_g1), p53 (Rn00755717_m1), p21 (Rn00589996_m1), Gadd45α (Rn00577049_m1), Gadd45 β (Rn01452530_g1), Gadd45 γ (Rn01352550_g1), Icam1 (Rn00564227_m1), Hspd1 (Rn01441529_g1), Txn2 (Rn00584162_g1), Clpp (Rn01527475_m1), Ymel1l (Rn00586650_m1).

Techniques: Activity Assay, Expressing, Antioxidant Activity Assay

Cmklr1 knockout is associated with increased dNK cells. (A) The amount and distribution of dNK cells of wildtype and Cmklr1 −/− were investigated by immunohistochemically staining with antibodies against DBA Lectin in different magnifications. Scale bar = 200 μm. Quantification of the number of dNK cells. (B) The concentration of IL-15 in serum of wildtype and Cmklr1 −/− at GD 12 was measured by ELISA. Total RNA samples from wildtype and Cmklr1 −/− placentas at GD12 were subjected to qRT-PCR. The middle placenta section from each litter (four litters from four mothers per group) was used for analysis. The expression of (C) IL-8, (D) MMP2, (E) MMP9, (F) IL-10, (G) TNF-α and (H) IL-6 were examined. The results were represented as mean ± SD, n = 4. * p < 0.05 and ** p < 0.01. IL: Interleukin; TNF-α: Tumor necrosis factor-alpha; MMP: Matrix Metallopeptidase; TIMP: Tissue inhibitor of metalloproteinases. qRT-PCR: quantitative reverse-transcription polymerase chain reaction; SD: standard deviation. TPBPA: trophoblast-specific protein alpha.

Journal: Frontiers in Cell and Developmental Biology

Article Title: The Regulatory Roles of Chemerin-Chemokine-Like Receptor 1 Axis in Placental Development and Vascular Remodeling During Early Pregnancy

doi: 10.3389/fcell.2022.883636

Figure Lengend Snippet: Cmklr1 knockout is associated with increased dNK cells. (A) The amount and distribution of dNK cells of wildtype and Cmklr1 −/− were investigated by immunohistochemically staining with antibodies against DBA Lectin in different magnifications. Scale bar = 200 μm. Quantification of the number of dNK cells. (B) The concentration of IL-15 in serum of wildtype and Cmklr1 −/− at GD 12 was measured by ELISA. Total RNA samples from wildtype and Cmklr1 −/− placentas at GD12 were subjected to qRT-PCR. The middle placenta section from each litter (four litters from four mothers per group) was used for analysis. The expression of (C) IL-8, (D) MMP2, (E) MMP9, (F) IL-10, (G) TNF-α and (H) IL-6 were examined. The results were represented as mean ± SD, n = 4. * p < 0.05 and ** p < 0.01. IL: Interleukin; TNF-α: Tumor necrosis factor-alpha; MMP: Matrix Metallopeptidase; TIMP: Tissue inhibitor of metalloproteinases. qRT-PCR: quantitative reverse-transcription polymerase chain reaction; SD: standard deviation. TPBPA: trophoblast-specific protein alpha.

Article Snippet: The TaqManTM Gene Expression Assay primers were purchased from Life Technologies, including mouse Interleukin (IL)-6 (Mm00446191_m1); IL-8 (Mm04208136_m1); IL-10 (Mm01288386_m1); Tumor necrosis factor-alpha (TNF-α) (Mm00443258_m1); Matrix metalloproteinase-2 (MMP)2 (Mm01253624_m1); MMP9 (Mm00600157_g1); Human Glial Cells Missing-1 (GCM1) (Hs00961601_m1); syncytin-1 (Hs00835189_CE); Caudal-type homeobox gene 2 (CDX2) (Hs01078080_m1); Human leukocyte antigen G (HLA-G) (Hs00365950_g1); and CK7 (Hs00559840_m1).

Techniques: Knock-Out, Staining, Concentration Assay, Enzyme-linked Immunosorbent Assay, Quantitative RT-PCR, Expressing, Reverse Transcription, Polymerase Chain Reaction, Standard Deviation

Detailed information of primers used in the present study.

Journal: Cells

Article Title: Biodegradable Poly(D-L-lactide-co-glycolide) (PLGA)-Infiltrated Bioactive Glass (CAR12N) Scaffolds Maintain Mesenchymal Stem Cell Chondrogenesis for Cartilage Tissue Engineering

doi: 10.3390/cells11091577

Figure Lengend Snippet: Detailed information of primers used in the present study.

Article Snippet: COMP , Homo sapiens , Cartilage oligomeric matrix proteine , 2.21# , 101 , Hs00164359_m1.

Techniques: Amplification

Normalized gene expression of cartilage extracellular matrix components and the transcription factors SOX9 and FOXO1 after 7 (full bars) and 21 (checkered bars) days (d) in the BG scaffolds (blue) and the PLGA-infiltrated BG scaffolds (red). Relative gene expression of collagen types II ( A ), IX ( B ), XI ( C ), SOX9 ( D ), FOXO1 ( E ), aggrecan ( F ), COMP ( G ), collagen types I ( H ) and X ( I ) were related to the native porcine cartilage (red line = 1). The pure bioactive glass (BG, blue) and single (1P, red) PLGA infiltration. Three independent experiments with cells of three different donors are summarized and show mean with standard deviation. Significant differences were calculated after one-way ANOVA (post hoc Tukey Test): p values * p < 0.05, ** p < 0.01, **** p < 0.0001. Gene expression was normalized to the reference gene β-actin (ACTB). pACs: porcine articular chondrocytes, hMSCs: human mesenchymal stem cells.

Journal: Cells

Article Title: Biodegradable Poly(D-L-lactide-co-glycolide) (PLGA)-Infiltrated Bioactive Glass (CAR12N) Scaffolds Maintain Mesenchymal Stem Cell Chondrogenesis for Cartilage Tissue Engineering

doi: 10.3390/cells11091577

Figure Lengend Snippet: Normalized gene expression of cartilage extracellular matrix components and the transcription factors SOX9 and FOXO1 after 7 (full bars) and 21 (checkered bars) days (d) in the BG scaffolds (blue) and the PLGA-infiltrated BG scaffolds (red). Relative gene expression of collagen types II ( A ), IX ( B ), XI ( C ), SOX9 ( D ), FOXO1 ( E ), aggrecan ( F ), COMP ( G ), collagen types I ( H ) and X ( I ) were related to the native porcine cartilage (red line = 1). The pure bioactive glass (BG, blue) and single (1P, red) PLGA infiltration. Three independent experiments with cells of three different donors are summarized and show mean with standard deviation. Significant differences were calculated after one-way ANOVA (post hoc Tukey Test): p values * p < 0.05, ** p < 0.01, **** p < 0.0001. Gene expression was normalized to the reference gene β-actin (ACTB). pACs: porcine articular chondrocytes, hMSCs: human mesenchymal stem cells.

Article Snippet: COMP , Homo sapiens , Cartilage oligomeric matrix proteine , 2.21# , 101 , Hs00164359_m1.

Techniques: Gene Expression, Standard Deviation

(A) Manhattan plot of GWAS results in the isolated BA cohort. X-axis: genomic coordinates of tested SNPs. Y-axis: significance level on a -log 10 scale. The genome-level significance threshold is indicated by the red horizontal line ( P = 5 × 10 −8 ) and the suggestive significance threshold is indicated by the blue horizontal line ( P = 1 × 10 −5 ). (B) Regional association plot of 2p16.1 after meta-analysis. P -values (left Y-axis) obtained from additive frequentist association test on genotyped and imputed SNPs. The recombination rate (right Y-axis) is calculated from the 1000 Genomes Phase 3 European ancestry dataset. The top BA-associated SNP is imputed SNP rs6761893 (purple circle), located in the fifth intron of the gene EFEMP1 . The colors refer to r-square correlation of each SNP to rs6761893 based on the 1000 Genomes Phase 3 European ancestry dataset. The circles represent the genotyped markers and squares represent imputed markers.

Journal: PLoS Genetics

Article Title: A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1

doi: 10.1371/journal.pgen.1007532

Figure Lengend Snippet: (A) Manhattan plot of GWAS results in the isolated BA cohort. X-axis: genomic coordinates of tested SNPs. Y-axis: significance level on a -log 10 scale. The genome-level significance threshold is indicated by the red horizontal line ( P = 5 × 10 −8 ) and the suggestive significance threshold is indicated by the blue horizontal line ( P = 1 × 10 −5 ). (B) Regional association plot of 2p16.1 after meta-analysis. P -values (left Y-axis) obtained from additive frequentist association test on genotyped and imputed SNPs. The recombination rate (right Y-axis) is calculated from the 1000 Genomes Phase 3 European ancestry dataset. The top BA-associated SNP is imputed SNP rs6761893 (purple circle), located in the fifth intron of the gene EFEMP1 . The colors refer to r-square correlation of each SNP to rs6761893 based on the 1000 Genomes Phase 3 European ancestry dataset. The circles represent the genotyped markers and squares represent imputed markers.

Article Snippet: Droplets for ddPCR were generated from reactions containing 30 ng of cDNA from each of the cell populations using TaqMan (Thermo Fisher Scientific, Waltham, MA) rat Efemp1 primer and probe set labeled with FAM (Rn01434325_m1) and TaqMan rat Rps12 primer and probe set labeled with VIC (Rn00821373_g1) as the control.

Techniques: Isolation

(A) ddPCR showing relative expression of EFEMP1 transcripts in human liver specimens. Fold change of EFEMP1 was determined by normalizing to the reference gene, TBP . Error bars indicate standard deviation. (B) Relative expression of Efemp1 transcripts in six cell populations from normal rat livers. Rat gene Rsp12 was used as reference gene. Error bars indicate standard deviation of technical triplicates (cholangiocytes, portal fibroblasts, hepatocytes, Kupffer cells, and sinusoidal endothelial cells) or technical duplicates (hepatic stellate cells).

Journal: PLoS Genetics

Article Title: A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1

doi: 10.1371/journal.pgen.1007532

Figure Lengend Snippet: (A) ddPCR showing relative expression of EFEMP1 transcripts in human liver specimens. Fold change of EFEMP1 was determined by normalizing to the reference gene, TBP . Error bars indicate standard deviation. (B) Relative expression of Efemp1 transcripts in six cell populations from normal rat livers. Rat gene Rsp12 was used as reference gene. Error bars indicate standard deviation of technical triplicates (cholangiocytes, portal fibroblasts, hepatocytes, Kupffer cells, and sinusoidal endothelial cells) or technical duplicates (hepatic stellate cells).

Article Snippet: Droplets for ddPCR were generated from reactions containing 30 ng of cDNA from each of the cell populations using TaqMan (Thermo Fisher Scientific, Waltham, MA) rat Efemp1 primer and probe set labeled with FAM (Rn01434325_m1) and TaqMan rat Rps12 primer and probe set labeled with VIC (Rn00821373_g1) as the control.

Techniques: Expressing, Standard Deviation

(A) EFEMP1 is expressed in SMA positive smooth muscle cells, but not (B) CK19 positive intrahepatic cholangiocytes in control liver. EFEMP1 is expressed in both smooth muscle cells and intrahepatic cholangiocytes in (C, D) BA, (E, F) TPN, and (G, H) ARPKD liver. Scale bar = 25 μm. (A-F) were taken at a lower magnification and correspond to the scale bar in (F). (G, H) were taken at a higher magnification and correspond to the scale bar in (H). Arrowheads indicate vascular smooth muscle cells and arrows indicate cholangiocytes.

Journal: PLoS Genetics

Article Title: A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1

doi: 10.1371/journal.pgen.1007532

Figure Lengend Snippet: (A) EFEMP1 is expressed in SMA positive smooth muscle cells, but not (B) CK19 positive intrahepatic cholangiocytes in control liver. EFEMP1 is expressed in both smooth muscle cells and intrahepatic cholangiocytes in (C, D) BA, (E, F) TPN, and (G, H) ARPKD liver. Scale bar = 25 μm. (A-F) were taken at a lower magnification and correspond to the scale bar in (F). (G, H) were taken at a higher magnification and correspond to the scale bar in (H). Arrowheads indicate vascular smooth muscle cells and arrows indicate cholangiocytes.

Article Snippet: Droplets for ddPCR were generated from reactions containing 30 ng of cDNA from each of the cell populations using TaqMan (Thermo Fisher Scientific, Waltham, MA) rat Efemp1 primer and probe set labeled with FAM (Rn01434325_m1) and TaqMan rat Rps12 primer and probe set labeled with VIC (Rn00821373_g1) as the control.

Techniques: Control

EFEMP1 is expressed in both (A) SMA positive smooth muscle cells and (B) CK19 positive extrahepatic cholangiocytes in BA liver. Scale bar = 25 μm.

Journal: PLoS Genetics

Article Title: A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1

doi: 10.1371/journal.pgen.1007532

Figure Lengend Snippet: EFEMP1 is expressed in both (A) SMA positive smooth muscle cells and (B) CK19 positive extrahepatic cholangiocytes in BA liver. Scale bar = 25 μm.

Article Snippet: Droplets for ddPCR were generated from reactions containing 30 ng of cDNA from each of the cell populations using TaqMan (Thermo Fisher Scientific, Waltham, MA) rat Efemp1 primer and probe set labeled with FAM (Rn01434325_m1) and TaqMan rat Rps12 primer and probe set labeled with VIC (Rn00821373_g1) as the control.

Techniques:

Detailed information of primers used in the present study.

Journal: Cells

Article Title: Biodegradable Poly(D-L-lactide-co-glycolide) (PLGA)-Infiltrated Bioactive Glass (CAR12N) Scaffolds Maintain Mesenchymal Stem Cell Chondrogenesis for Cartilage Tissue Engineering

doi: 10.3390/cells11091577

Figure Lengend Snippet: Detailed information of primers used in the present study.

Article Snippet: COMP , Sus scrofa , Cartilage oligomeric matrix proteine , 1.76 , 117 , Ss03375728_u1.

Techniques: Amplification

Normalized gene expression of cartilage extracellular matrix components and the transcription factors SOX9 and FOXO1 after 7 (full bars) and 21 (checkered bars) days (d) in the BG scaffolds (blue) and the PLGA-infiltrated BG scaffolds (red). Relative gene expression of collagen types II ( A ), IX ( B ), XI ( C ), SOX9 ( D ), FOXO1 ( E ), aggrecan ( F ), COMP ( G ), collagen types I ( H ) and X ( I ) were related to the native porcine cartilage (red line = 1). The pure bioactive glass (BG, blue) and single (1P, red) PLGA infiltration. Three independent experiments with cells of three different donors are summarized and show mean with standard deviation. Significant differences were calculated after one-way ANOVA (post hoc Tukey Test): p values * p < 0.05, ** p < 0.01, **** p < 0.0001. Gene expression was normalized to the reference gene β-actin (ACTB). pACs: porcine articular chondrocytes, hMSCs: human mesenchymal stem cells.

Journal: Cells

Article Title: Biodegradable Poly(D-L-lactide-co-glycolide) (PLGA)-Infiltrated Bioactive Glass (CAR12N) Scaffolds Maintain Mesenchymal Stem Cell Chondrogenesis for Cartilage Tissue Engineering

doi: 10.3390/cells11091577

Figure Lengend Snippet: Normalized gene expression of cartilage extracellular matrix components and the transcription factors SOX9 and FOXO1 after 7 (full bars) and 21 (checkered bars) days (d) in the BG scaffolds (blue) and the PLGA-infiltrated BG scaffolds (red). Relative gene expression of collagen types II ( A ), IX ( B ), XI ( C ), SOX9 ( D ), FOXO1 ( E ), aggrecan ( F ), COMP ( G ), collagen types I ( H ) and X ( I ) were related to the native porcine cartilage (red line = 1). The pure bioactive glass (BG, blue) and single (1P, red) PLGA infiltration. Three independent experiments with cells of three different donors are summarized and show mean with standard deviation. Significant differences were calculated after one-way ANOVA (post hoc Tukey Test): p values * p < 0.05, ** p < 0.01, **** p < 0.0001. Gene expression was normalized to the reference gene β-actin (ACTB). pACs: porcine articular chondrocytes, hMSCs: human mesenchymal stem cells.

Article Snippet: COMP , Sus scrofa , Cartilage oligomeric matrix proteine , 1.76 , 117 , Ss03375728_u1.

Techniques: Gene Expression, Standard Deviation